PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g11150.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Dof
Protein Properties Length: 436aa    MW: 46349.7 Da    PI: 8.0671
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g11150.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.48.9e-40103163262
                          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  Zjn_sc00003.1.g11150.1.sm.mkhc 103 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 163
                                     7899*****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2799152IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32105161IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.929107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAKCRAEGGG GGGGDCLIKL FGKTIPVPEA AAAAAAGDAD KDLQQSGSSA TEPKGQETTL  60
QDSSGSPPQQ GVTDTEESSA EKNSSSDQQQ GETTNNKEKL KKPDKILPCP RCNSMDTKFC  120
YYNNYNINQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKSK SASAASQFLQ RVRAALPIDP  180
LCTSARTNGT VLSFGSDMSS LELAEQMKHL KEKLVPITRI KNSDDQSAGS YAEGGSAKGQ  240
EPKLIDQKEQ VTADKSANIV QHPCMNGVTM WPFSCTPPLA CYTSGIPIPF YPAAAGYWGC  300
MVPGAWNTPW LPHSQSETTT SPSAASPASA KSNCFTSGKR PRDGDEEGNT TGNGKVWVPK  360
TIRIDDADEV ARSSILSFIG INGDKGGKDS KGCKLSSVFE QKDESKTATH AVIDSLPFLR  420
GNPAALSRSL TFQEGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985552.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLK4AAA50.0K4AAA5_SETIT; Uncharacterized protein
STRINGSi035812m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.15e-54cycling DOF factor 3